Scaffold JGI25382J43887_10278765

Overview

Basic Information

• Taxon OID: 3300002908
• Scaffold ID: JGI25382J43887_10278765
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003039	Metagenome / Metatranscriptome	511	Y
F069067	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_102787651	F069067	N/A	GKLLKDGPETVRMRIGEGWDVDIYKAMILAVEEDSMISLPA*
JGI25382J43887_102787652	F003039	GAGG	MKTQELKYVTRRRAAVLLGLSELELSRISSESGXGHKEIAGEQEETYFTYEELRQICMXAVHQVN*