Scaffold JGI25382J43887_10006515

Overview

Basic Information

• Taxon OID: 3300002908
• Scaffold ID: JGI25382J43887_10006515
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5667
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007745	Metagenome	345	Y
F018154	Metagenome	236	N
F029070	Metagenome / Metatranscriptome	189	N
F029394	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_100065153	F029394	N/A	LGLLRQIDVLALLGAIVALFLGPTSGPWWTVTGATTSKLLTVQVSPFYLQTDATGLSPTTFFSVPLGSFTSLLFILSLIALGASSIHRGTWWNKLAIYFSLCTMMELYLSFLLMYHGALTMLLGAYGIVPPYSGTSHLLGNIVGLDFNSYLNPLVTASFSLPFYLGFLSLGLIATSLILNDIAEKRKRRDQLGVAAIFTIDSEA*
JGI25382J43887_100065156	F007745	N/A	MGKSERLEAKDPFLRDYKQNLQDVIKGMKKVGPSGLQLLVQEMIRSRWIKDRRASYPYEVAWVFDRREEAISRVMTKLEEAGDIEPAGLGRGKKGPVKPYKPRTLRLPKQTIKKPSTPPRKDI*
JGI25382J43887_100065157	F018154	N/A	MVVEAEIAKLRKFQEFLRTDDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLLFSMLFGQHKKIIELEKKILMLETLATKIETAVPVQPLQGPVEKLEAKIA*
JGI25382J43887_100065158	F029070	GAG	MKFMQMLDSQTYRVLQKEAKNRGASIQELLRTVIIPDWLSEHRRRERP*