Scaffold JGI25614J43888_10000157

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000157
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19008
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012518	Metagenome / Metatranscriptome	280	Y
F031381	Metagenome / Metatranscriptome	182	Y
F049678	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000015712	F031381	GGCGG	MKAKAARENPNEEAKPSCEGVSRLAEPCNQSAAILCDKCDRWFCAAHAQDDQWHACQLDPGDEGGEG*
JGI25614J43888_1000015717	F049678	AGGAGG	MQTAAVKWIGEEKFVATSPSGHAMAMDSDRESNKAPGPME
JGI25614J43888_100001575	F012518	GAGG	MFAAMLFAISIVALSQFAAYYWRAMLAGAAAQPVSDRVLAAVGVQNGQLTGQDFPALLGLHELTPELRSGGKGLGLVRAYYALVDCIASLVGRSMPAVAAWSERELTICARYAAVQIDQRLQANLELAASLRSC*