Scaffold JGI24801J43971_1009522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24801J43971_1009522

Scaffold JGI24801J43971_1009522

Overview

Basic Information
Taxon OID	3300002903 Open in IMG/M
Scaffold ID	JGI24801J43971_1009522 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	526
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026650	Metagenome / Metatranscriptome	197	Y
F068677	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24801J43971_10095221	F068677	GGA	MAVADSCDLSETRSVPGLQHNFVQLWWRVEGIPSQGVAAKHIITMKFSTEAIVAVAVAVVFALLSLGAIAREQGQEPARSGHKAYIAASNVHLSQVAAS
JGI24801J43971_10095222	F026650	N/A	MNVCKLLDLCPEVVRAELMADAALGPFHYWIRRASRLSRKLGSSVARVFETCRNPEAVESNQLAASI*

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