NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_10180659

Scaffold draft_10180659


Overview

Basic Information
Taxon OID3300002898 Open in IMG/M
Scaffold IDdraft_10180659 Open in IMG/M
Source Dataset NameMetagenome Biopara biogasfermenter May 2013 pooled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1254
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)50.823236Long. (o)7.142629Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
draft_101806591F065813N/AMTTLISFFGWFDIIIVTPFVLYFGYKIIKWIISKLKKQPQEGEIDTPDVES*
draft_101806592F073596N/AMNVFEKIKLWFTSVSKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALSQAQPVQTKGQVIKAVKQDKKISANYKTAYFKERAQNFNK*
draft_101806593F095525N/AMKAFTDIGLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
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