NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_100089

Scaffold draft_100089


Overview

Basic Information
Taxon OID3300002893 Open in IMG/M
Scaffold IDdraft_100089 Open in IMG/M
Source Dataset NamePDIso3.OB1V3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3206
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)51.166666Long. (o)-116.15Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000708Metagenome / Metatranscriptome926Y

Sequences

Protein IDFamilyRBSSequence
draft_1000892F000708N/AMIKSDTTLAQIAARFAARHDVEWNRGAYVIVDRRTAHTIARLRPIPDTDRFELFYWSNVKERWTTFGNLGRMKLRLDSAHEIVENDPMFRVQRSR*

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