3300002893: PDIso3.OB1V3

Overview

Basic Information

• IMG/M Taxon OID: 3300002893
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0096892 | Ga0051974
• Sample Name: PDIso3.OB1V3
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6644799
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Unclassified → Unclassified → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → fen → surface soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.166666
  • Long. (^o): -116.15
  • Alt. (m): N/A
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000708	Metagenome / Metatranscriptome	926	Y
F027362	Metagenome / Metatranscriptome	195	Y
F032937	Metagenome / Metatranscriptome	178	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
draft_100010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	187878
draft_100021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	272132
draft_100089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3206

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_100010	draft_10001023	F027362	MTEAAQRALQAFSKGEMTALELRRRLGGATYGDVLRLLDEASLPLPRAPVHGREASLNIAREWMFPKHVP*
draft_100021	draft_10002180	F032937	LKLVAIKALAGFNYVRPDAVIAIGATDSAKCTIYMTGGVAIPSHEPAKDVIAKLQAAEAEPETN*
draft_100089	draft_1000892	F000708	MIKSDTTLAQIAARFAARHDVEWNRGAYVIVDRRTAHTIARLRPIPDTDRFELFYWSNVKERWTTFGNLGRMKLRLDSAHEIVENDPMFRVQRSR*