Scaffold draft_11522116

Overview

Basic Information

• Taxon OID: 3300002856
• Scaffold ID: draft_11522116
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Tailing Pond Surface TP_surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16594
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude tailings pond, Wood Buffalo, Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F029429	Metagenome / Metatranscriptome	188	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_1152211612	F029429	AGAAGG	MTPSRLKLARAYLGYSLTDMADALRLSPTTGATTIRKMEAGKVNITGPISVAVDAMLKGYDPFEDENDDDAP*
draft_1152211620	F063699	AGCAG	MDYTAQAVSDLYALAKAHKIRAYQIANEAGITRVTLSNWKSKRSEPTLSAFLAAQHALDRLVKAKQEN*
draft_1152211632	F014495	AGGA	MIVAQQAAPLGKAHRVSSDSAWPLRGVDGKTFAERRSEQKKATSK*
draft_1152211633	F009516	AGG	MSRPMIYPMGEMEVGDTGTMPAINKGDAKRTSRNVSQYGIRHDKSFMCRTANGITTITRLR*