Scaffold draft_102312

Overview

Basic Information

• Taxon OID: 3300002848
• Scaffold ID: draft_102312
• Source Dataset Name: PDIso5.158Aa3July202012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1762149
• Total Scaffold Genes: 1397
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1048 (75.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Tepid (25-34C) → Sediment → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -38.358926
  • Long. (^o): 176.368682
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002998	Metagenome / Metatranscriptome	514	Y
F029092	Metagenome	189	Y
F058394	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_1023121177	F029092	AGGAG	VRTFDNNGKLVAETTQTRTLDGRSISTMTQFNTYNGQPVHQNITVRESNGKVTTTNVINGKLLP*
draft_1023121367	F002998	N/A	MPQEIRIAASKLVWDESKGAEKQFLFAVLAKAKNLREVTVRKTSIERLVTWTAATLTLPDQIVDDLLKKYLLHDHRAVIISFLELLKIPHAEGMIEESFDLSALSNEQVQTAARSLLESADRAGAVLYLKYLVLQGGSWAAIEQVLPAGE*
draft_102312907	F058394	N/A	MALRAKIGPGEAEPEGFGGFKVEGENEEWPDLRRNPKRRG*