3300002848: PDIso5.158Aa3July202012

Overview

Basic Information

• IMG/M Taxon OID: 3300002848
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0095979 | Ga0049945
• Sample Name: PDIso5.158Aa3July202012
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5709735
• Sequencing Scaffolds: 3
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Tepid (25-34C) → Sediment → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → volcano → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: New Zealand
• Coordinates
  • Lat. (^o): -38.358926
  • Long. (^o): 176.368682
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002998	Metagenome / Metatranscriptome	514	Y
F003129	Metagenome / Metatranscriptome	505	Y
F004004	Metagenome / Metatranscriptome	457	Y
F007018	Metagenome / Metatranscriptome	359	Y
F029092	Metagenome	189	Y
F058394	Metagenome / Metatranscriptome	135	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
draft_100008	All Organisms → cellular organisms → Bacteria	46443
draft_102310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	598671
draft_102312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1762149

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_100008	draft_10000825	F003129	MPESLSIASPPAVAEPALIPRNTARVTISILLTLLDSWAVVALGGALYRVSAHHPFWLTGIVLLFVSLFASLARTWYLALAVRPR*
draft_100008	draft_10000827	F007018	MRLSAGRIRSLATRYALAEAAAFPGLRTEPNGFATNRKPAPVVKHSRLRFAHQF*
draft_102310	draft_102310505	F004004	MTKAKTMRMPGKERPAASRLVIQRPPTTEPHHRNLCRNTKPSAGQPIRQTAEGLDYRFLWSLPRVIGPGSLCKARPRQSDYNANTQANGLNINATHIALRTYTLTR*
draft_102312	draft_1023121177	F029092	VRTFDNNGKLVAETTQTRTLDGRSISTMTQFNTYNGQPVHQNITVRESNGKVTTTNVINGKLLP*
draft_102312	draft_1023121367	F002998	MPQEIRIAASKLVWDESKGAEKQFLFAVLAKAKNLREVTVRKTSIERLVTWTAATLTLPDQIVDDLLKKYLLHDHRAVIISFLELLKIPHAEGMIEESFDLSALSNEQVQTAARSLLESADRAGAVLYLKYLVLQGGSWAAIEQVLPAGE*
draft_102312	draft_102312907	F058394	MALRAKIGPGEAEPEGFGGFKVEGENEEWPDLRRNPKRRG*