Scaffold B570J40625_100102445

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100102445
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3524
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F030434	Metagenome	185	N
F085231	Metagenome	111	Y
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10010244510	F085231	AGGAG	MKEQAKAAGLSYLRAAFSCAAALYMSGITDWKTLGNAFIAGLLGPLLRAMNPSDSTFGVK
B570J40625_1001024455	F090388	AGGA	MALLKIKCRVCAKIGPGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDTERARDEDIDA*
B570J40625_1001024456	F030434	N/A	MAITEMSQIVQVILDRSQEKQAAACGFARSTGEFLTTPDRRYDRKTNYHEFILENSEAVGSEIAVAQYMGLQNFVPTVHTYRDEADITVGNLGFEVKWTRYINGHLIIHKDYPRLTDVAILVVNKSPVYQIVGWMPVLWAKKPKYYNAADGNFWVSQRELFEMDALRKSVYGITEN*
B570J40625_1001024459	F003067	N/A	MTAAQSLIAIAIGICTLMGFAAGLVRHLVKYYLSELRQDGNGGHNLRGRVDRIESKVDSIYEMLLQR*