NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100076849

Scaffold B570J40625_100076849


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100076849 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4362
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F011077Metagenome / Metatranscriptome295Y
F017788Metagenome / Metatranscriptome238Y
F020851Metagenome / Metatranscriptome221Y
F037701Metagenome / Metatranscriptome167Y
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10007684910F017788AGGAMKKIIITSLLISLLIPTASAQAATKPLNTKGNKASCKNIKTKYESEVMSKWSNGLASDQDVLKEIDLNIGMLTAKQKSTTGKIKTTITSWITAEKNTKIALTNKNVEAITAAMNLKISSISNFDKLCKGIEK*
B570J40625_10007684914F004475GAGGMTNWTEELNDKQKEEVWNFVVFTVKEIREQIAKDIEATIPLWKSRGFLKSRRTQKAFEASAAIARG
B570J40625_1000768492F098668AGGAMMKNISNLISESGCFKLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKDIERELTK*
B570J40625_1000768493F011077GAGMITDNMTWAEEESGLWKGWTYSLEKNRYYFDDVGNESLAAFWADEFLNQAYE*
B570J40625_1000768494F037701AGGAMIKSKEWRVSNRVWLGVGFSPRRIALGFSVDRFNANIDFLCFWVSLEY*
B570J40625_1000768495F020851GAGMSEDIVDLAISMAEIDTGMQLPLEEREAMKQRIITRIANLNE*
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