Scaffold B570J40625_100059272

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100059272
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5275
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y
F028166	Metagenome / Metatranscriptome	192	Y
F035764	Metagenome / Metatranscriptome	171	Y
F045752	Metagenome / Metatranscriptome	152	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000592721	F001019	N/A	NYEPSLEILEVNYSCSPGGVDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELASL*
B570J40625_10005927210	F091936	GAG	MTNPDRNRSMRLKLVIEEMLKDIDMSGEEWNDRDKDGIPYWEKWHKADD*
B570J40625_10005927214	F001176	GAG	MSDNGTGMDTPPNSQPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETILGQKKTKPKKV*
B570J40625_10005927215	F001280	AGGA	MVQDSATTVSNMCVECGCEALGSETGIANIPGGILDVSRDGEAGLTLNMTATPEQRENFINE*
B570J40625_10005927216	F028166	AGGAG	MSDGLNLTGFNEVKDSGSNNLNLNPTGTEPAAAFPAKDVSSQDGAGLGNNGK*
B570J40625_1000592722	F024786	GGAG	LPVYRVFGTKYQNYYTIIEAADQFEAVDLANALPETEWNSILTDDVIEATDVYLNEDTSNELQLNI*
B570J40625_1000592724	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGMVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITNQERKAIIDRMPKEKTGDYKYSWLHETNNTNKQYIDQSYM*
B570J40625_1000592728	F045752	N/A	MADPNQTPARGNWVCPCSGCSKAVAFERDNLVELILLHKAEYLIYRGSSFDAEGNLMWAKDDALAYSEGLDYVVKLIEDRKPKPKKKG*
B570J40625_1000592729	F035764	GGA	MTVIRTAYHIGRNGIKQMIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPKSMEIASAFWEESDGWKGWTVEENKYYFNDIPEHDLMGVMESLEEMTNR*