Scaffold B570J40625_100047441

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100047441
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6208
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027847	Metagenome / Metatranscriptome	193	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000474414	F056558	N/A	MGILENLEKAWDPEFQFESNPIPETDNIGREMFWEDLGRPTEDSSLAVKLFSETCCADCSCK*
B570J40625_1000474415	F084234	AGGAG	MFDWFTNPFSVFFDWLGYFLIFGAVVTMVLVIGAVVAIPLGLKLLGVAFAKTIVIETSKVLKDLGIANIDLKQQKETKQMKAYLDRKVTPILTKVS*
B570J40625_1000474416	F095473	GAG	MKCQVINCKSTELVYSGTDAFMLGINTETYCYKCANAYAQIDRVMSKVRQDYLDSLTPVSTLTTSD*
B570J40625_1000474417	F027847	AGG	MNPFTSIIDWLDENADYAPIGAFIGLGIAIALAFIFGGN*