NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100046345

Scaffold B570J40625_100046345


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100046345 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6310
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F002071Metagenome / Metatranscriptome596Y
F003663Metagenome / Metatranscriptome474Y
F005177Metagenome / Metatranscriptome409Y
F018349Metagenome / Metatranscriptome235Y
F085262Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10004634511F000311AGGTGGMYFELTAPDRLSMEMAYWDAQITGLDPQAMSPLTFNIGTGSIEKVSRLRDKFNLIESYVSDHEPTGYLRS*
B570J40625_10004634512F018349AGGAGVDYQDGFQDGVKFSREVIINNIRKWAEDHDEGATLDWVADRIEFGTLDNDI*
B570J40625_1000463452F003663GGAMLSTALEILEATKASVFDDEIMGLAGELHTRRNELPDEMHAKFLFMYSSALASKVADLVTKVLLSETEMSALIDTITELDNLTETILEENN*
B570J40625_1000463454F085262AGGAGMDNLYSILSEWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL*
B570J40625_1000463455F002071AGGAMTTLEIGQTITTAKSGVTGIIKAVDNHPSGVNRVLLDVNGTERWTSVSA*
B570J40625_1000463457F005177AGGAMRYRVEIFDEVKSNDLTIYSEQGVDKEYLTELVFSNIRNFDGNIKAYVYDSLRKKKVTALYLPMEIVSGVKSKVNLV*
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