Scaffold B570J40625_100041914

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100041914
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6776
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F090064	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10004191415	F003748	N/A	MFQVNRKDAGGRYIDAEGEYTVSVTKVEENLDPKGREVCKVTFTTGDGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLDLVITTRFEEYEYNGERKKTLRLKGMKAVAPVAADTEEKPF*
B570J40625_1000419143	F090064	GAGG	MSMKTYWTVYFGKFRRSEYTFQGTNAKRDAQRLAKRLGGRVVREKGQQ*
B570J40625_1000419146	F002227	AGG	MKLTIQSKTNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIMQRASETETL*
B570J40625_1000419149	F001964	AGGTGG	MSRNLFAPTRYKVQISGAIGWADLKQRTVSYETVIFATRKEAEQAAKDLNPNEYTQGRIRVVPKDMAEDYDVYPVRERDNMNPKSSI*