Scaffold B570J40625_100033440

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100033440
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7959
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F002935	Metagenome	519	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F009530	Metagenome / Metatranscriptome	316	Y
F017829	Metagenome / Metatranscriptome	238	Y
F019325	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000334401	F002935	GAGG	MSNRTKGYTGTIVDGKKLAEIANGIYNLQYSSDFSECTVDNLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTNKTEDISDYIRVFGSRLDSNCSLWQSKMSVASDILAI*
B570J40625_10003344017	F006744	AGAAGG	MNLDEFRAHVEATRQASKAEALSVLSATMSVSTTTKEGR*
B570J40625_10003344021	F009530	GGA	MTITYSIWQGSRLLSIDNVAHEVKAIDHLIDSLNDSDLGKKTKFTANIQNIKVGAN*
B570J40625_10003344023	F019325	AGGAG	MTQLTETLFSTIVHDYHNGGVKSSYGLDNYTRKEILAYLIRSKGCECINCL*
B570J40625_1000334404	F017829	AGG	MANRFRVEIYDANKMNDITIYSDQGVDKEYLTELVFSNIRNFSGRVNAYVFDNVKKKKTTALFFDEKTVEKVNSITRGLKKMELGL*
B570J40625_1000334406	F004051	GAGG	MTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPNKETRWTSVSASTLA*
B570J40625_1000334408	F002245	AGG	MSNVIRVPHTVVFEAIINLDTIPANLLPALIALDEATMTQMCKEATLHALAMSNVLPLANENNTWAEVTIKGDN*