Scaffold B570J40625_100022246

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100022246
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10581
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F006218	Metagenome / Metatranscriptome	378	Y
F008415	Metagenome / Metatranscriptome	333	N
F011150	Metagenome / Metatranscriptome	294	Y
F013409	Metagenome / Metatranscriptome	271	N
F027426	Metagenome	194	Y
F028431	Metagenome / Metatranscriptome	191	N
F031850	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002224617	F011150	N/A	MCRNMDINYYHKQHEKIKQQFRHDIIMQKLKEKEYREYKNMFIKLLLIFVISVLLITLIAR*
B570J40625_10002224618	F013409	N/A	MKIILTIIMMNGTIYNLGYEIDSYSSRICDKLFDKVTYVGKTSGKNKIGTFYKSKEVFAHSCSIEKTTKGNNERKNKTG*
B570J40625_10002224619	F004111	N/A	MKEKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSFMGILLEDVTSKEEYEELEIPVQPMNTKGTSSANNRYDESTINELIKKVHYAPHTAKLDFLWRANRELIDQIKIKDLATYNSILNKFNSKRDEITTQNEV*
B570J40625_1000222462	F031850	N/A	MNRSMYQDDDDNDFYTANVKAVVYIEKDNSITVKFTGLQNKEHSAIFSSWLMMLLNIENAIISNEQSKAIH*
B570J40625_10002224626	F006218	N/A	MSNEGGWVINAEKLNFCHSLDHSCYEIYFNNVRAKEKQALVSNNNNDKRMEMYIEYLKKQKCKHKYATE*
B570J40625_1000222464	F027426	AGG	MFNREDYKALIVTGLIILLGYSAMHLLVFLDGYFKLSIY*
B570J40625_1000222465	F008415	AGG	MTSIQQLQEHIKRLNDEKLLNQYDLYASYQIKDIKEVMYQRLVECELENRRLLTHKIIEDEYEYAQ*
B570J40625_1000222466	F028431	GAGG	MNMHNKKTIILNGLDVVTNRKMISLKLPVWKKLISCSRHEDITTTKLIDKLITKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFNTQELIER*