Scaffold B570J40625_100020437

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100020437
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11192
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F024548	Metagenome / Metatranscriptome	205	Y
F044443	Metagenome / Metatranscriptome	154	N
F050232	Metagenome / Metatranscriptome	145	N
F062754	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000204373	F062754	N/A	MKKQNKKEKEEIKMKLAYFDRLVKQTRELIKQGYTVPDLSSLVRPSR*
B570J40625_1000204374	F050232	N/A	MKYKYSVRIHNVSTTEELETIMNEYGSKGIRVVKVDLLGVQLVNCRQQARYTLYLEEKIKK*
B570J40625_1000204376	F044443	N/A	MLNHIIEQFKNKLYTALTYLTVVSFIYLIIASIVFAFRHPWATDMERFIHIGDALMFNKISYKEMRGEYEER*
B570J40625_1000204377	F024548	AGGAG	MKSADNIVEIEEVELKKYTKLKEGTKIEPGDLVYIYDNCYAKLSKGSRVCKEVINKFNTILRKK*
B570J40625_1000204378	F001840	AGGA	MKDQDSIFLICDCFEHGLLVERFKDENEVSLSLFERGLSGRTLGWSERLRWCWQIIRYGRPWSDFVILNEENQQQLKDFLNKKI*