Scaffold B570J40625_100019456

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100019456
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11574
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F004430	Metagenome / Metatranscriptome	438	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013618	Metagenome	269	N
F015066	Metagenome / Metatranscriptome	257	Y
F017290	Metagenome / Metatranscriptome	241	N
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001945611	F002044	N/A	MANTRKPIKRKKINRRVVRQSPEPLTKIDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD*
B570J40625_10001945615	F004430	AGG	MAKAHEVLSMLIPTGGWAITGNEYEGIEFIEAEPITKAEFEAGFAKYDAWKAEQDAIQASTKKALLEKLGITEDEAKLLLA*
B570J40625_10001945617	F013618	AGG	MTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYMQIELVALNNENYNLQVNDGLTLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYNGTLAQDDDGDQIYELLSELFLNNWNEVPAAETWSGYDPTITWANAENIGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKIAIDLTSIATFGYRGETLNTVLHDATDAQAVADRFIALRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTQQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSGTLTWENAIGAVA*
B570J40625_10001945621	F017290	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTLEGEAYKTTNISGTFQLDMLADWGKANSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGIDAQTVSFTFTVSKGAVVETFS*
B570J40625_10001945624	F015066	N/A	IVKFAGANVVNVELFDRSDPSFADLLVRELAASYAQKTDAYAANIAAQNSIGSTGSSIYKAIADGIADSYGVMRFTPNRLLVAPSGGQNDIDFAGLLGAVDGSQRPLFAAAAPQNAGGLISQGSTAGTVAGLSLVVDPNYTGNDAGAKYGLVYPSAAMRFHESGTIELRANLVANGRIEIGLYGYVAVVNRFPTAFRYLTVA*
B570J40625_1000194564	F037698	AGGAG	MCANHDEMTHIINWAYQNKLREQWLLDNPDAEYIGWMSI*
B570J40625_1000194565	F002162	GGA	MPNYEYECDGEGLSIVLELPMKHEIPCCQVCGAKLRRVYSAVPAIFKGTGWAGKGG*
B570J40625_1000194566	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVKVEPSTTYCDLCNDDRLLHEGDLLRCYNCHAINRIPYHA
B570J40625_1000194567	F002357	GGAG	MAFNLEDYEDVATLNKWFQSNYPMGSLRIIKQEHHIFTDNNGNRIDELFVVQTGAFRDANDTNPAVMNVARGLQSEYPKHMARFYLEDVITSSYGRSIALLKATNKTAIKDDMKKVESNPSFKDKLQSRQSMYGKTGSKSAQIETILRDSFEADKPKDPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE*