Scaffold B570J40625_100017614

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100017614
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12325
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002489	Metagenome / Metatranscriptome	554	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003643	Metagenome / Metatranscriptome	475	N
F003690	Metagenome / Metatranscriptome	473	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005531	Metagenome / Metatranscriptome	397	Y
F007363	Metagenome / Metatranscriptome	352	Y
F008132	Metagenome / Metatranscriptome	338	Y
F014129	Metagenome / Metatranscriptome	265	Y
F015730	Metagenome / Metatranscriptome	252	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000176141	F003643	AGGAGG	LATKEDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKK*
B570J40625_10001761417	F005531	AGAAG	MTITYTLWQGSQLLAVNQKASKPEEILAVIKELEKLGKGFTYNIREVEVK*
B570J40625_10001761418	F008132	GAGG	MMTKWDTIQEDVKDAYVYLDEEEAYNEALDTEEDFFGFSKAIELDHLTDEELDNVATMLGIK*
B570J40625_10001761419	F003690	AGGA	MIPNGFELHITNEYGFELDSFLGAIYLPWHTIAITTALLIAYKIYKRKKNK*
B570J40625_10001761421	F014129	AGGTGG	MTTLIREITLSNVQADEANLIVCVFCSDYASEMFCGKCNEYKGLMTLGEWLAYTQESWVM
B570J40625_10001761422	F015730	N/A	MLSEKTFNKIVWEYQNGGVISNHPELTTYERKALLKYLFALPTKEKN*
B570J40625_10001761423	F007363	GGA	MRGYSIVDLLVDQYYSPTSLRRRYNGGIINFAEKREDTYPAEGWQDFVIRYRPTNSFQDEWATVAVRISD*
B570J40625_10001761424	F002598	AGAAGG	MATKLYTIESLLVGKNYRSNTRHFSGEIISAEHRPEIWYGENTEAYLIEINAGGLRNKFATIAVKVGE*
B570J40625_10001761425	F000447	AGG	MGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGALFNSPEAE*
B570J40625_10001761426	F101047	AGGA	MGRMKELYTQILECDTCYGKGWLYYGDEDNYDVEACQCNPLSFFQENK*
B570J40625_10001761427	F004840	GGA	MYKLTCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMANEYSTVNLYTPTGKCYTKVFYRSGMVAVK*
B570J40625_1000176146	F002489	AGG	MTENKEQPQNLEDNLPMVNYIMLHRIYDLLTLISNKLVGSEDTSKMVEYHNQGYLLGPTPSFVPDTPNTDINFVQDTIDLEQ*