Scaffold B570J40625_100015630

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100015630
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13272
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F013184	Metagenome / Metatranscriptome	273	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000156301	F050376	AGG	MTLDEYRAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
B570J40625_10001563011	F020168	GAG	MYDILGSTIAIILIAFLCSPIVLAIYMWNGAKFDGDNDGQEDLPNRWDKE*
B570J40625_10001563012	F002245	AGG	MANLMKVPHTVEFEAIIDLDKIPANLLPRLIALDTYSVTKMCKEATLHALGMSNALPLANENNTWAEITIKGDN*
B570J40625_10001563016	F017829	AGG	MANRFRVEIYDANKSNDITIYSDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDEETVEFNKNLIKSATGIELGS*
B570J40625_10001563026	F013184	GGAG	MNRYGFVIKLEGAVMANNEKEAHEKINLHLNDLGEVDSARYDLNWPDVSWDMEYELL*
B570J40625_1000156305	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFAGEIVSAKPRPEIWYGDKTEAFLIEIRTGGLRNKFATIAVKVGE*
B570J40625_1000156306	F004840	AGGA	MYKVTCQYDYEESPHWSQTYENEFGAWESFFRFTDWGMANEYSTVNIYTPSLKCYTKVFYRNGEVKVKI*
B570J40625_1000156309	F017134	GAGG	MELFIVSCLNYEICGAQETFETESEYEVYGDDYICAECYASEEMEFFETIGWADSDALASAGHGMDEDY*