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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100013215 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14714 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011143 | Metagenome / Metatranscriptome | 294 | Y |
| F020143 | Metagenome | 225 | N |
| F026865 | Metagenome / Metatranscriptome | 196 | N |
| F033425 | Metagenome / Metatranscriptome | 177 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_1000132151 | F033425 | GAGG | MAIVTSQVTVTGTSQVIISVDNVTRDVLLHAKHEIFIGNSGVTSTSGYIMDNGDVLRLSLVDGEDLWAVTSGGSGTLHVLASKVD* |
| B570J40625_10001321524 | F020143 | AGG | MILPDRALKAIYVENLDNLMDKMKKMDADLQKEFKRELNKSVRPVAKLAQSFVPHSPFPGWRDVEPSYPPAWGWANDKAHRGRTIGENKRSRWKWSQSEVVAGIKLSSAKTKVQRVKGATFSVTALAVINKSVPGIIYELAGFGSSRSRGRTRRVSRNPNASESFIGKLNGTANSSAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG* |
| B570J40625_10001321525 | F026865 | N/A | VAVATGISPKDLLEVDPAIYAAIKAILQERHYNNKKATVRRK* |
| B570J40625_10001321526 | F011143 | AGGAG | MHKIEIVKKDGKKLTYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTELLFGDEYINQYSDIDLLYDSKNG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |