Scaffold B570J40625_100013100

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100013100
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14792
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (66.67%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008814	Metagenome / Metatranscriptome	327	Y
F013414	Metagenome / Metatranscriptome	271	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F073544	Metagenome / Metatranscriptome	120	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001310010	F000473	N/A	VEFINKDKDHFKYGVNEWTGEPNKPVFYTAEMAKRIREIKKPDMGLQMDIVKYPQFLAIRLYEDNFLKYEGVKKEMVIDYVGKVKKVIESYGVRCELEGVPSARILRSN*
B570J40625_10001310011	F073544	AGGGGG	VREYYEVIKIVFIHSERVYGSVESLGLYASKVRYQKDGIEIEEVLENDEFTVMDEIIFEHEEESN*
B570J40625_10001310012	F000671	GAGG	MEKILCYCCNKTKNKLNVRKSILMPINLLMCETCIASKFEPRWVIILAGRQLGSEAVKEFIIKKRYAGNDIIASELLV*
B570J40625_10001310016	F016396	AGGA	MMRKSERLRLLEMQVVRLEMMVELYTQSLTNLLQSQGLQSPTNLDAGKWYKAKLDTLDKE
B570J40625_10001310018	F008814	N/A	MADQLTVLEEIIKEIGEELYQKWYNALAMEDRNEEASKAMSVNAGETAFWVVQTFMNKFNNAAEELKGE*
B570J40625_10001310022	F014017	AGG	MDKLIEYLDENHRKKIADEIRYLELPPEWRPHEVIRYIVRIIEKQNGQTPR*
B570J40625_10001310026	F073565	AGGAG	MTNGNDLTGFNEVKAPTTTAWNGEQYAADPAAAFPSTDKSSQDGSGLGNGGK*
B570J40625_10001310027	F001280	GGCGG	MCTECGCNIFGMAYMEPVTIVDASTDGESGLTLEMTATPEQTRQFINE*
B570J40625_10001310028	F026561	N/A	MSNFQKEDGTGMTPPVGAGSPSGAVTSRDATRKYPKQGIKPRMKIDVNSHGIRRETSLDPKPKKTRPKKV*
B570J40625_10001310030	F006846	AGGA	MKMLIEFVEKYLMRPKRLRHAIEAVVHENDELLRRLSEYKEDGPTNLTWAEGDKWYGWTYNKSKGRYYFDDIGNESLMGLWEDQWAREEAESK*
B570J40625_10001310039	F013414	AGGCGG	MSKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWQANRHNDELNTEDGIYNSGQSSEGLFLANELNETLNRLIKTYKWENIKLPVDPAKFIKKMPKVETQSYRHSWLHDTDTRTHVTIDHPFI*