Scaffold B570J40625_100012691

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012691
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15069
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005738	Metagenome / Metatranscriptome	391	Y
F058938	Metagenome	134	Y
F085230	Metagenome	111	Y
F099169	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001269122	F085230	AGGAGG	MTVAELIQQLQQCDPTLQVYTFNDHDIHAIAYVDGSMDEWVHINLGAEQ*
B570J40625_10001269123	F058938	AGGAG	MTDVKHYDRTTVTFHRGNAFTPEGVDAAPFATFTMNDLVDRDLIDAICALVREHTNKAHADFCNIKLTTEDWDV*
B570J40625_10001269125	F099169	GGAG	MNKTIAEALAPFRPLTYTEHYYIDLGYRHEQGKAEEYEYKAAMAEGPEARRLMNRGALEAMTRSY*
B570J40625_1000126916	F005738	N/A	MSFGVALRNSVAIGLAGIVTLFSGTRDSGASVGNLLTESGDNLVQEDDGQILLE*