Scaffold B570J40625_100012581

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012581
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15157
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (80.49%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F003643	Metagenome / Metatranscriptome	475	N
F003663	Metagenome / Metatranscriptome	474	Y
F003690	Metagenome / Metatranscriptome	473	Y
F007363	Metagenome / Metatranscriptome	352	Y
F008132	Metagenome / Metatranscriptome	338	Y
F008357	Metagenome / Metatranscriptome	334	Y
F014129	Metagenome / Metatranscriptome	265	Y
F044483	Metagenome / Metatranscriptome	154	Y
F051704	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001258110	F002489	GGAG	MTTENKEQPQNLEDNLPMVNYIMMHRIYDLLTLISNKLVGPEDTSKMVEYHSQGYLLGPSPSYTPGDEDESK*
B570J40625_10001258112	F044483	AGG	MVNKLYIDQIAYKMNRAKKNGYEDTTKSSEALNWMVEKIESYLNKCLNVENGNCYISWKHDDCRVLMEILYDLTKDEKYTEKPWKADPNKKLLWD*
B570J40625_10001258120	F051704	N/A	MHDHNNITLATGSGITEMQLMWLIMGVMAIHHTWMWWKMRSKRCTCKK*
B570J40625_10001258124	F008132	GAGG	MMTKWDTIQADVADAYRHLDDVEEIEQEDEEDFFGFAKAIEIDHLTDEQLDEVFNMFGDK
B570J40625_10001258125	F003690	GGAG	MIPSGFELIISNDYGLEFDSFFGAIYLPWHTIIITALALIAYKIYKRKKNK*
B570J40625_10001258127	F014129	AGGTGG	MTTLSIREITLENVSADEANLIVCAFCSDYASEMFCGNCNEYKGLMTLGEWLAYTQESWVM*
B570J40625_10001258129	F007363	GGA	MRGYSIVDLLVDQYYSPTSMRRRFNGGIINFAEKRENVYPPEGYEAFSIRYRPTGSFTDEWATVAVRISDY*
B570J40625_1000125813	F008357	AGGAG	MAGQKNWEVDQNTTFSFIVEYKDPNDIPISLVGATAKMQVRDTKGGSKLAFTLTSPSTGGITIDAALGKLTIKMTPTQTNKLFYPKSSYDLMVIDSNGNKIKLLEGFLTLNRSVTI*
B570J40625_10001258139	F003663	AGGTGG	MLSTAIDLLDATKNSIFDEDIMGLAGELHTRRNELSDEIFAKYLYMYSSALSAKVADSITKVLLTEKEMSDLCATIDEMENLSETILEENE*
B570J40625_1000125814	F003643	AGGAGG	LSKTKEDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKK*