Scaffold B570J40625_100010676

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100010676
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16655
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008073	Metagenome	339	Y
F044503	Metagenome	154	Y
F069854	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001067629	F069854	N/A	MRNIKPFIRKAYWTALNNTITFKGALVPCYDTFAPDTAVFPYILIGNQTQEDDKDNQEYNYITTITLDVVTAGIAPYGRIDADLIADSILQIVCLYPENYLALQVGKIVTAKLVQQTSLS
B570J40625_1000106767	F044503	N/A	MRGRNLTEYEKELIFKAWQDRKQIKVIAQEMGLSYGCIYFQLKKRSLVG*
B570J40625_1000106769	F008073	N/A	MKEIILKHLQKMEFVCGLKQFKDYNQDEATELLGCLLDLFLKYGWMNEARVDYILQAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPTNEEIAYWIEVGKQTFRDNYQEAKETGHCKHLADWGMYWFNKFQEKGILKPWDFNVQEIESDVRKELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDGKNLDQLV*