Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100007922 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100007922 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19531
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (22.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19531

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (22.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019449	Metagenome / Metatranscriptome	229	Y
F023093	Metagenome / Metatranscriptome	211	Y
F042864	Metagenome	157	Y
F053888	Metagenome	140	Y
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000079221	F023093	N/A	KPDGSIGASAAVIVAGVPIAALSIGKKLTVGGKVVRITSQTHKTLSAWITLVVIDDNQ*
B570J40625_10000792216	F019449	N/A	VTIETFTTVCVPGIASLAYFSACIANLYTRNWAMATMWGCYGVANLALLSTVLRK*
B570J40625_10000792222	F042864	N/A	MTTKSIKAELVNDRAMTELLKRKAIDFRETAKLKDRDGSVKGLGAYALYGVDHVRGQLVVLASEPTSADFNKYVTAKAKAEVVARYDHVVEYRDAGSHSNPKVTILCWTKAE*
B570J40625_10000792223	F053888	N/A	MNQEPTDLITVGDRPLRLSRPVLPHAARRLAGILPQLNALNTAGKSQADAAFALGVSIGAVRTWVALTGISWTNLNRRGPYAKRTK*
B570J40625_10000792239	F058813	GAGG	MEPMSAPTLVLVSGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDYLWSLNLEGDFHNEAFKCKHRDLLVTLGKFARSLNPDVFAENLAHFVPIQMGPDEVAPETVVVSDWRYINELRVSQSILWNLGWKVRTVYVSTAGIGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL*
B570J40625_10000792240	F065732	GGA	MEEPMSMEETIAWAKSIGISAERVAFLLACPKYTRTGRKDQPAYIKTDNPNHHLQKQGDCWWLRIRRRKTDIVHNLGKDLETARRHRDEM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100007922

Overview

Ecosystem & Geography

Associated Families

Sequences