Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100005275 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100005275 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24084
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (77.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24084

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (77.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F015600	Metagenome / Metatranscriptome	253	Y
F024314	Metagenome / Metatranscriptome	206	Y
F045756	Metagenome	152	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000527513	F045756	AGGAG	MNKYNVLISYVVEAEDEMRAVFALNKSLYPLSENEIAKFNAFHVEESK*
B570J40625_10000527522	F007263	AGG	MLNIIDKTEFYEVSDEQFFCCDESQFKYYCEEHLEFMGCYYCEFDYTKNCEEQ*
B570J40625_10000527523	F000447	GAGG	MGYIEIFRIDKDGAGWVDLESATPDELFNIELGLLNEGALFTTKEAN*
B570J40625_10000527524	F004840	GAGG	MEYEYAVTSAYDGHAPHWTQRYENEFGAWESFFRFTDWGMANEYRTVNISTPTGKMYTKLFYRDGRVVVKV*
B570J40625_1000052754	F024314	AGG	MNKEEILTPEQAQAVYLFQIEQKLRFVIAKQIEEKFHGKYHNESHEIAQFIRYTS*
B570J40625_10000527541	F015600	GAGG	METTQLEPRLQKLIDMGESGTDILHGELKNLILLAEQEYSEIATEEEDGGYSDAMLSMDRTRAEGRLDALVEVYGLTYQLAFAIDDRRKNGNV*
B570J40625_10000527552	F066789	GAG	MTCIKAGCNYELDLDGQVTCSVCGAMDDDKQPVDIFESQIDFE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100005275

Overview

Ecosystem & Geography

Associated Families

Sequences