Scaffold B570J40625_100004108

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100004108
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27278
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F014956	Metagenome / Metatranscriptome	258	Y
F015997	Metagenome / Metatranscriptome	250	N
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F033801	Metagenome	176	Y
F051740	Metagenome / Metatranscriptome	143	N
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000410815	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPINFWVAITASTILQLGRFAVVFMDFLNPTKGRSPFPPKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLVEPKVIKRRKRRVVVKKVTEDAPKESKGYVTSFQTITL*
B570J40625_10000410820	F033801	N/A	MKYEIKWKSGRIITDAETVEDAIKKFKELGIEVEDKEISIALFG*
B570J40625_10000410824	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDAVTIIHDGKSYKVAFDMVTANELPEKVQTPTEQTNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKLF*
B570J40625_10000410825	F014956	GAG	MNIQEFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGNAIHYNEEIDWNAISDHKKSLWYDSQNFQIQMGNEYSKRQG*
B570J40625_10000410827	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGYTFEPHDIDLSLYPVINDRNLMPLVDENEMDWVIIKN*
B570J40625_10000410831	F052398	N/A	MNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIVESLPKINEVVKNILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRVEEEGKKKAIIIAQKLAVWRIVLNKK*
B570J40625_1000041085	F051740	N/A	MIVREKSKLMIYVGADPTGKAGILKKAIGNFTQAELRGWYSTNPTSVSQHVIFTPEKKTYEPNKEDDSSSTEQG*
B570J40625_1000041087	F015997	N/A	MSQLIQPSEVIAGGVARPTPADIRLDKSLISPHIQDAEFRWIVPAIGLTLYDSMVTDKGSSTAFTSTSYQDIWDKQLKSFCANAVLYEASPYMVMQLGSNGLYTLDNEYGQNVGVDGLKFYQDTLLQRLDVKKKRIKDLLCNYSTPLTAFIPSAIGCPESTCDEHEEEITDIYNTLGIVL