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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100003299 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30219 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (73.58%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000952 | Metagenome / Metatranscriptome | 822 | Y |
| F017833 | Metagenome / Metatranscriptome | 238 | Y |
| F025009 | Metagenome | 203 | Y |
| F030983 | Metagenome | 183 | Y |
| F039983 | Metagenome | 162 | Y |
| F056421 | Metagenome | 137 | Y |
| F088417 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10000329917 | F025009 | AGGA | MKVKWYEGRKGKIGIAKVQTDDGDIEYRISAVDGFLEHMDVQQVVAWGDWFPIEAGDALFPEGV* |
| B570J40625_10000329928 | F030983 | AGGA | MTNEIETIVSTQEGAKISVSEWDDGGAWLHLQVRGGSAYATMTRAEAEQLLAGLQLILAQEVTA* |
| B570J40625_1000032993 | F039983 | GAG | MKSHLSEELVKQIFFYSDEKRKNPLIADEVDIVQFAEKLEAVLRPLIAAEEHKRCVTIVAHMNREVASKLANQRP* |
| B570J40625_10000329931 | F056421 | AGGAG | MKDDDVEDLFAYGWLDTGIAIVLALLAIAALSFFAGYLT* |
| B570J40625_10000329937 | F088417 | GGAG | MAERIYIVNSAQGTRLVKANLRQQALSHVANSTFTVRVATQDDLVAQLTAGTKIEQYKAPEELIEGSESPGN* |
| B570J40625_10000329944 | F000952 | AGGAG | MATSDQEQKSVQVPQHKRMAMGEKLDGQSMKGSTPTKQSGGLSQAKKK* |
| B570J40625_10000329945 | F017833 | N/A | MRTLSDLIGGIKARQAEIASSLVAGNATNWESYTRLVGHNAGLQEALEILNNLMKEDENE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |