Scaffold B570J40625_100003191

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100003191
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30668
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F034147	Metagenome / Metatranscriptome	175	Y
F049637	Metagenome / Metatranscriptome	146	N
F059884	Metagenome / Metatranscriptome	133	Y
F084121	Metagenome / Metatranscriptome	112	N
F088879	Metagenome / Metatranscriptome	109	Y
F093739	Metagenome / Metatranscriptome	106	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000319118	F099147	N/A	MIKLLVDLAPFHKDEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK*
B570J40625_10000319122	F088879	AGGA	MREIATDIRIAVINAITPLTLSGVTIPIYDTELPPTINPANYVNSAAFVLITDQNEAETTNNDCSIRQNATIQINIVTKFPQGSGGKKLSENISNAIQQKMTLDYLTLPDDLQVINIRKNFSRTQIEQGSSQIAYQKILSYTLDIFFVS*
B570J40625_10000319124	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGSLANFEDSTGLGIGEAFTGSSIPKLDYIYALLHECHKVACLRKSTNSVSLDELKVWIEGKDVMKLFNNVLSDLLLELGVGESQEKKT*
B570J40625_10000319125	F059884	N/A	MLLVGRTKLPYEQLFCLSRKELKALIKGHEIDQKDMVEAMRTHAIIGLQPHLKKGANLDPLKLWPLPWDNFGKPLETTPQDFAKAKKLLEIASKLERNGKSKNRR*
B570J40625_10000319130	F014605	N/A	MIVNLAIALQDIEGNKITSENGEFMYLSKMVGNALFSAEEKDDPIRLYELAKKIYYSDGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKEK*
B570J40625_10000319131	F049637	N/A	MNILKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIVYLVYKIINESKKLKNNGKG*
B570J40625_10000319138	F001775	GAGG	MKDLLDDERKRIAIIAFLIGVLLTFVIYPKPEQETVYKYETVTKTDTLMVEVKDTVYVPKKWIKSQIIRDTILVDYKPQISLFKTSIPSEYGSTNVSGEVLGEVLKMTATNDFKIPVVINTITETKTETIIKKSKGIYLGASVNSLLQPGAKVSYLDNKYIFEYQYQPFTRSHQIGISKKLF*
B570J40625_10000319143	F093739	N/A	MKYSTEQIKRAVRSCVCCQNNGLKVHLDMEDHTEAGEIFFNHFSGIVEPRLTELLENTRYVIKLQLITRHLQHNYK*
B570J40625_10000319145	F084121	N/A	MPRKKATTYHSKFILKRRFITKFNEFTDWQDIGYGEFLSIEDVQDKIKMLIQNYKNKHIEVHFEMNGKLLDFNGNEISHPIKFTPK*