Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100002742 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100002742 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32960
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (34.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32960

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (34.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F014486	Metagenome / Metatranscriptome	262	Y
F028084	Metagenome / Metatranscriptome	192	Y
F032162	Metagenome / Metatranscriptome	180	N
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000274212	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALVKVALHTLVNKINAKGRKGGLLDLATTKAQSIIDEMTQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD*
B570J40625_10000274236	F014229	GGAG	MNKLQLAAVALLSVFFVGCATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE*
B570J40625_10000274237	F091423	GAG	MPTGILQALLSAVSGIFAAINNVFGAKNTKEMKERQEAQKEVDHQSGIENAVKEKDLEQARKHISS*
B570J40625_10000274238	F010817	AGGA	LNKLASILVLNFLLVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLICFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGITPYKDNFGNELFLISSEHLVYFGVMNSWLKEKVPQDNILDKTIDKINN*
B570J40625_1000027424	F014486	GGAG	MNIEKLLNENLESFYPWSDNDNPPLDTNKSFVQKQREIDEVFEGWRASM*
B570J40625_10000274241	F028084	N/A	VKKLILILPLLFLVSCSEPNFDSRELPTKYPETPTMGSANDVSKELYKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100002742

Overview

Ecosystem & Geography

Associated Families

Sequences