Scaffold B570J40625_100000534

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64310
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (45.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F009072	Metagenome / Metatranscriptome	323	Y
F023290	Metagenome / Metatranscriptome	210	Y
F048106	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000534109	F009072	N/A	MKKYNSEDYFSVIEIKTGRKIADCGEEADALAMVSFDPQNRTITRNKFMMGPVVDIEIPKQLPTTGIQIDSTLYKEHQENWMVEKINQLPQIKLPEGQGEPVII*
B570J40625_10000053427	F048106	N/A	MKDLQLFLNNILDIFTTKKSIPNDVFNDFIKYFYFTLDKEIKSNKSDLLKNKYIKIRKNGLNYIIANKEAIMANICKKKLSK*
B570J40625_10000053438	F000860	GGAGG	MLPKILSQDSNYDEWCEQEILNAYQEAAECDEFLFGDYDYEKEWMNNEGP*
B570J40625_10000053472	F023290	GGAG	MIFHIVEYLAQSPVWLGLCGAGLTVAPIMGIMLIHKQNGK*