Scaffold B570J40625_100000380

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000380
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72625
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (84.52%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003408	Metagenome / Metatranscriptome	488	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F029434	Metagenome / Metatranscriptome	188	Y
F050376	Metagenome / Metatranscriptome	145	Y
F051930	Metagenome / Metatranscriptome	143	Y
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000003801	F001562	GAGG	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE*
B570J40625_10000038019	F002489	GAGG	MQEDQNNENTSNLEDNLPMVSYIMLHRIYDILTLISNKLAGSEDTAKMVEYHQAGYLLGPSPSYNPGETNE*
B570J40625_1000003802	F029434	AGG	MKKYTFGVWLDIDAEDEEMALSLFDSVVKNAFVSDSYCFEWKEVADEIAV*
B570J40625_10000038020	F051930	AGGAG	MRIQYVSTYISMSGEGLVEKLLCPVDQSILFSNQDLEDRIYLYCLECKYKKNIGTSTYENIVRAVDSVNKK*
B570J40625_10000038032	F099281	GGA	MATVDKNFKVKNGLNVAGAATFGAAVNVENLVLNSTPLAFDSSTGRLKIQIGGVWKEIALLVDAQEDPTALTFMDIGLAIDYDGSPVYSVFANGVNTVATKFADGGSYTTDTFSYTFDSGTIA*
B570J40625_1000003804	F050376	AGG	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
B570J40625_10000038050	F001106	AGGAG	MSFDTLTVAELKEIATEFAVDTEGLKNKKEVIAAMAEEGVTYSVYQKTVKAIEEATEEIEILPVFDPKAQPEDTILVRMTRDNHRYDIHGYSFTKTHPFVAMSEDDAQKIFDTEEGFRLATPKEVQDFYN*
B570J40625_10000038053	F012456	GGAG	LDSSVALLQTASGLERPMAGNKPGIIKDSSVAQISAFLYYQASVLGKLTANKAFQSLFKQTIFNQINKDFGDYIDSSARVKPTALHHVYEWNKTGQETSRLFKLNRMDADGLSFRVTYDFKLSKSSVPSKNKKQRKKYVFATKASVMEAGMPVIIRPRSAERLVFELDGITVFMPKGSSVTVKSPGGRASSNQFRLHYGRYFGGQLVNNSIKASGFQNIFNAKMSKALDTPASIRKVQYSFTAGKIRLEADMELQTAFGGAL*
B570J40625_10000038054	F009961	GGGGG	MTVDYKIDAVFELRKFLWNELKTTKIFDPTEYYSDNINMEIIPIIPVQQQPELNQFLSGKKHIVYDKIGLSYEDIWLLCCEKVLFTVYSTDVSDIYEIRNLMTDLFRRMDDSARDINKFKDEPKIKFHSIQVVETSPITPSEELQGFLSSDIILEVKYSRITGPDGRFI*
B570J40625_10000038057	F003408	AGAAG	MPELVQTFKSMQKTESEKRKFLASIQGVDLNESSNENKEGSSFEDVKRRALGITASANDVVSLQGSFASEAGFGIGAGLGYSIE*