Scaffold B570J40625_100000109

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000109
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112996
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (70.52%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003965	Metagenome / Metatranscriptome	459	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F009882	Metagenome / Metatranscriptome	311	Y
F009885	Metagenome / Metatranscriptome	311	Y
F012455	Metagenome / Metatranscriptome	280	Y
F029107	Metagenome / Metatranscriptome	189	Y
F029439	Metagenome / Metatranscriptome	188	Y
F056558	Metagenome / Metatranscriptome	137	Y
F070095	Metagenome / Metatranscriptome	123	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000010910	F000808	GGA	MEYNYSLTTSYDGKLIHTLRVSDMLEAVDAWTKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
B570J40625_10000010914	F005348	AGG	MINTLMRFDCDECNGVGLIFWGNDLDYDVEKCDCNDFALGTLFTTKEAD*
B570J40625_100000109163	F006844	AGGAG	MARWEIEVIFEPTGDYMNFEYETDNEDEDSIFNEISNQLSIVPNLVESNEVE*
B570J40625_100000109166	F000263	GGAG	MNELSDSLAPHLQRMVDAGVSGLDIMHGELKNLMLIAEQDLASALEQEEKSEEAMDSMVRTECEGRLDMLVELYKLTYDLSFAINDRTKSNE*
B570J40625_10000010917	F012455	N/A	MINEIKNKIIRIQELRRSNAATPIPNKKKYTRKVKHKNKIK*
B570J40625_100000109170	F093851	GAGG	MLGYISTDVDDMVYALDSVLTTINSDDDPWLYNNTWRAMDFLKGLQIEGYFD*
B570J40625_10000010918	F003965	AGGA	MNSNVIIQVCKSHVPNKSAISDVNDEQFTFCEVCENNIERWYNDTDPERLPMWSSWVVSK
B570J40625_10000010920	F029439	AGG	MTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLEMLATKQGVVSHRYLSPNESRWVMNNTKVGN*
B570J40625_10000010921	F070095	AGGA	MEFYADLDYISFYINNLYPNGVAIEIPTWLIVGTISFIYSIKLIRKDR*
B570J40625_10000010924	F056558	N/A	MGILDNFENAWDDDFQFESKPISEKDAIGREKFWEDLGRPISPDVENDGLALKIFKDQCCNQCNCN*
B570J40625_10000010926	F009885	N/A	MTTADWAQFILTLLSIGAIIVGAIRWYIKIQIKPIHEMVCDIRSETKTNGGTSMRDEIKSIKSQQELDRKLSVEQKNKLDHMYDVLLEYIAKKSN*
B570J40625_10000010928	F029107	N/A	MTTHSLTTLSNTSATRLTPNGLHSGMDITIQNVDSSAYVFLGGEGVTASDYGYRLAPGSAWSVELPGLDAIYAITDINNSKVALLKTGLE*
B570J40625_1000001093	F009882	AGGA	MSVADSIIKLTKQTERSPTMSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTDLEWELHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY*
B570J40625_1000001094	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK*