Scaffold B570J40625_100000090

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000090
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118981
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (76.11%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000684	Metagenome / Metatranscriptome	938	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F015600	Metagenome / Metatranscriptome	253	Y
F017133	Metagenome / Metatranscriptome	242	Y
F023106	Metagenome / Metatranscriptome	211	Y
F026557	Metagenome / Metatranscriptome	197	Y
F040623	Metagenome / Metatranscriptome	161	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000090101	F015600	AGCAG	MGVSGTDILHGELKNLMLEAETEYLEIEKEEREGGYSDAMLSMDRTRAEGRLDAYVEVYNLTYALAFAIADRIKSRG*
B570J40625_100000090105	F040623	GGAG	MKVKIAIEQIVDIDEAMSNDIGFELYGPPDMSTEDKVDYLIARFVEDIDTLVKYDEVIHQVSVEYIED*
B570J40625_100000090117	F000684	AGG	MTLHGYTYQIGDLFTTSKTGVTGRIAGFTPMSNKVTRVSLILANGAQRLAMVKTSK*
B570J40625_100000090119	F011487	AGGAG	MGNIADEFYDEYYATTCPSCRENAVDEYEEKCTHCLLEEMSAHYNEDIALEMSLGLDY*
B570J40625_100000090124	F004840	GAGG	MEYEYLVTCQYDSEAKPHWEQRYENEFGAWESFFRFTDWGMANEYSTVNIYTPTGKCYTKVFYRDGRVQVRA*
B570J40625_100000090126	F007263	GAG	MASVIDQNEFYWIWDLSFLCCDEVQFRYQCKTHSELMGCYFCEFDYSKDCECEN*
B570J40625_100000090127	F002598	GAGG	MATKLYTIESLLVGKNYRSRNRHFEGEIVSAQKREGIWYGENTEAYLIEVNAKGLRNKFATIAVKVGE*
B570J40625_100000090131	F026557	AGGCGG	MINSVLTIPCEECNSTGLIFFGNDFDYDVETCECDFGIEQDLNQFNN*
B570J40625_100000090133	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKTLYPLSENEIAKFDPFMVEEVTQ*
B570J40625_100000090136	F017133	AGGAG	MSIWTKFATVSDYPKGLMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGENK*
B570J40625_10000009032	F000264	GGA	LELTTSIMAAKLYTSETFMRKRYLMDKKTPEDIAKECGCSLETIYVYLAKFGLRKSKR*
B570J40625_10000009097	F023106	GGA	MRISRRITDEEKIANKMGNIIADLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYANNGF*