Scaffold JGI24928J39210_1010812

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24928J39210_1010812

Scaffold JGI24928J39210_1010812

Overview

Basic Information
Taxon OID	3300002754 Open in IMG/M
Scaffold ID	JGI24928J39210_1010812 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	684
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061258	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24928J39210_10108121	F061258	AGGA	VKNVVAISLAIFLVPLAGCLDELTEPTKTELTDKEVILPDGDYYRLGPAVGYEQFEWNFTHIPTEGESSNFSWNVFFMNATNFQLFEDGNLTAEYFVNGSWISMDGNVTKGPFSVDSSDGYYLVVENSRGNENGDTLRFRIQFYGWK*

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