NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24928J39210_1007637

Scaffold JGI24928J39210_1007637


Overview

Basic Information
Taxon OID3300002754 Open in IMG/M
Scaffold IDJGI24928J39210_1007637 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007417Metagenome351Y
F063662Metagenome129N

Sequences

Protein IDFamilyRBSSequence
JGI24928J39210_10076371F063662AGGAGGMEVILNIIGGGQISLPKREIRGYYKDFLTGETKVQVGESEHKVRESLTEIAYLMGVVQ*ILI*INVNL
JGI24928J39210_10076373F007417AGGAGMTRYTLQVKLPSLGWVVAIKTRDLFYMARKRARLIKQGHEVKLTKKKGK*

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