Scaffold JGI24928J39210_1000831

Overview

Basic Information

• Taxon OID: 3300002754
• Scaffold ID: JGI24928J39210_1000831
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F024889	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24928J39210_10008311	F024889	N/A	MNSATIGALMIVGVVILYIFALSYVEGKIARQENEKLKKNIDKLNDKA*
JGI24928J39210_100083110	F014804	GAG	MTDDWIDNILDGEPSGITDTQWLIIESNIDLTSFTETMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF*
JGI24928J39210_10008315	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGVKSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN*