Scaffold JGI24928J39210_1000776

Overview

Basic Information

• Taxon OID: 3300002754
• Scaffold ID: JGI24928J39210_1000776
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4659
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090424	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24928J39210_10007763	F090424	GGAG	MIKVTTEGRNLPEFDTFINECIVALFPDGVNYDINIRYAKFIEDTGLYGGLCTGDQDSSTIDIATHWKYEXGEIIKYEPHEMAGTLAHELTHAKQFCKSQINMVDHVWKHNGVHTDCADLEYMDHPWEVEAYEYEKILVDLLWENV*