NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold codie8draft_1054396

Scaffold codie8draft_1054396


Overview

Basic Information
Taxon OID3300002733 Open in IMG/M
Scaffold IDcodie8draft_1054396 Open in IMG/M
Source Dataset NameCoal-bed methane well microbial communities from Surat Basin, Queensland, Australia, Sample - Codie-8 produced water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → Rauchvirus → Bordetella virus BPP1(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Coal-Bed Methane Well → Coal-Bed Methane Well Microbial Communities From Surat Basin, Queensland, Australia

Source Dataset Sampling Location
Location NameAustralia: Tara, Queensland
CoordinatesLat. (o)-27.0061Long. (o)150.3916Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097209Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
codie8draft_10543961F097209N/AMTTIAARFSTREIAADSMCSGDDSFYLVEKLRKGKNSIYGGCGDWDKILKMFQALESGGDLD

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