NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold codie8draft_1001638

Scaffold codie8draft_1001638


Overview

Basic Information
Taxon OID3300002733 Open in IMG/M
Scaffold IDcodie8draft_1001638 Open in IMG/M
Source Dataset NameCoal-bed methane well microbial communities from Surat Basin, Queensland, Australia, Sample - Codie-8 produced water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5772
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Coal-Bed Methane Well → Coal-Bed Methane Well Microbial Communities From Surat Basin, Queensland, Australia

Source Dataset Sampling Location
Location NameAustralia: Tara, Queensland
CoordinatesLat. (o)-27.0061Long. (o)150.3916Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042306Metagenome158Y
F066718Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
codie8draft_10016386F066718N/AMDAYMIDKTPNEKIALNEAVAAAGHYIEAIGVYDFLKFTPDQFDYLIEAIVTAYVESLQRQVVESEGIQFP*
codie8draft_10016388F042306AGGAGGMTKKKVPVIQMEDGKWYRVKGYTHTECCDCALVHKEQFRIVDGSLEWSAVRDDKMTEERRKELGIKLTRKKSA*

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