NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005475J37263_105593

Scaffold Ga0005475J37263_105593


Overview

Basic Information
Taxon OID3300002677 Open in IMG/M
Scaffold IDGa0005475J37263_105593 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.471116Long. (o)-72.17263Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060207Metagenome / Metatranscriptome133Y
F105724Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0005475J37263_1055931F060207N/AGRVASRAESEETMLNIHHGEARPSRVTVAFEHGAISFMMSKDATFEDLADRLDRLGKRRHGKPVAIAVKLAAAFEAHRRGLISGLGRGRGVGAAASGTPDPT*
Ga0005475J37263_1055932F105724AGGAMAKGQRKSNREVKKPKKTAAERSKSAAILISTQAPGTSYQDRVKKGAKPHA*

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