NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005490J37275_107820

Scaffold Ga0005490J37275_107820


Overview

Basic Information
Taxon OID3300002672 Open in IMG/M
Scaffold IDGa0005490J37275_107820 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)805
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.53312Long. (o)-72.189707Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023505Metagenome / Metatranscriptome209Y
F080063Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0005490J37275_1078201F023505N/ALEDGGGRKKAAGIQEIIPGDWAKVEPGWLAQPLEDRFARNGNRRHNSPVPLTAFARRQ*
Ga0005490J37275_1078202F080063GAGGVALGQRTAKSGGRPSAKGEEAETQSQTCLHPVRESASANAGSSEPRGLALRFSRRKALNGPAMRPQLRLPWRMASGSWQPREGAPNVSAGKREWRTPNP

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