Scaffold draft_1330936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold draft_1330936

Scaffold draft_1330936

Overview

Basic Information
Taxon OID	3300002596 Open in IMG/M
Scaffold ID	draft_1330936 Open in IMG/M
Source Dataset Name	Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	552
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Medicine Hat, Alberta Canada
Coordinates	Lat. (^o)	50.033333	Long. (^o)	-110.666667	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_13309362	F005744	N/A	APDAPPEQALYRIQQTYPDGSGGRLNIDWTGLHRLHDLIHDWIAMEGCVCETCSTRGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEIRRLVEV*

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