Scaffold C688J35102_119376356

Overview

Basic Information

• Taxon OID: 3300002568
• Scaffold ID: C688J35102_119376356
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000556	Metagenome / Metatranscriptome	1027	Y
F092626	Metagenome / Metatranscriptome	107	Y
F101232	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_1193763561	F092626	N/A	DEDDLDWFVTALDETVSRAEKMPRALVRFALHAARAGRTPRKRLARA*
C688J35102_1193763562	F101232	GGAGG	MTIDLRAVRAALLLAAAILFFAGAGLGIEHERKTLIVWGVGFGLVTLDRLIVLAIETFWVRG*
C688J35102_1193763563	F000556	N/A	PGVEVRVNFGVFAGRGATPAEIDDLAKALLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVSPEHLPDDGHELDILCGRLVEAAEQWATTCIAERHADVAEP*