Metagenome / Metatranscriptome Family F092626

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092626
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	TEEDLDWFVSALEETVARAEKMPRALVRFVLQAARAGRTPRRRLARA
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.654 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.234 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.336 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.67% β-sheet: 0.00% Coil/Unstructured: 57.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01061	ABC2_membrane	26.17
PF02412	TSP_3	5.61
PF01243	Putative_PNPOx	5.61
PF07883	Cupin_2	2.80
PF00005	ABC_tran	2.80
PF00294	PfkB	1.87
PF13304	AAA_21	1.87
PF13340	DUF4096	0.93
PF07992	Pyr_redox_2	0.93
PF09985	Glucodextran_C	0.93
PF13669	Glyoxalase_4	0.93
PF12698	ABC2_membrane_3	0.93
PF13683	rve_3	0.93
PF00300	His_Phos_1	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.77 %
Unclassified	root	N/A	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	71.96 %
Unclassified	root	N/A	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	69.16 %
Unclassified	root	N/A	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	68.22 %
Unclassified	root	N/A	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	68.22 %
Unclassified	root	N/A	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106701350	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300000956\|JGI10216J12902_109833765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	733	Open in IMG/M
3300000956\|JGI10216J12902_118652007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300002568\|C688J35102_119376356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	683	Open in IMG/M
3300003321\|soilH1_10143524	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300004156\|Ga0062589_100956047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300004479\|Ga0062595_100069347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1722	Open in IMG/M
3300004479\|Ga0062595_101065248	Not Available	702	Open in IMG/M
3300004643\|Ga0062591_100445498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1090	Open in IMG/M
3300005164\|Ga0066815_10055883	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005177\|Ga0066690_10290510	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300005181\|Ga0066678_10994127	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005343\|Ga0070687_100100018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1622	Open in IMG/M
3300005356\|Ga0070674_101006105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	732	Open in IMG/M
3300005435\|Ga0070714_101005446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	811	Open in IMG/M
3300005441\|Ga0070700_101306788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300005456\|Ga0070678_100026127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3942	Open in IMG/M
3300005456\|Ga0070678_100199115	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300005544\|Ga0070686_100110124	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300005614\|Ga0068856_102504855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300005843\|Ga0068860_102104063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300006031\|Ga0066651_10101785	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300006173\|Ga0070716_100156300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1473	Open in IMG/M
3300006237\|Ga0097621_101910294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300006806\|Ga0079220_10075893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1671	Open in IMG/M
3300006903\|Ga0075426_11355365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300009098\|Ga0105245_10036992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4338	Open in IMG/M
3300009137\|Ga0066709_102773120	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300009137\|Ga0066709_104134820	All Organisms → cellular organisms → Bacteria → Terrabacteria group	528	Open in IMG/M
3300009156\|Ga0111538_10339830	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300009174\|Ga0105241_10279565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1425	Open in IMG/M
3300009553\|Ga0105249_12753669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300009553\|Ga0105249_13559307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300010145\|Ga0126321_1347771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	683	Open in IMG/M
3300010326\|Ga0134065_10126905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	871	Open in IMG/M
3300010366\|Ga0126379_10950637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	963	Open in IMG/M
3300010403\|Ga0134123_11131899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	808	Open in IMG/M
3300012200\|Ga0137382_10935549	Not Available	624	Open in IMG/M
3300012208\|Ga0137376_11629093	Not Available	536	Open in IMG/M
3300012211\|Ga0137377_11710122	All Organisms → cellular organisms → Bacteria → Terrabacteria group	550	Open in IMG/M
3300012350\|Ga0137372_10146506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1932	Open in IMG/M
3300012356\|Ga0137371_10215415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1502	Open in IMG/M
3300012356\|Ga0137371_10576566	Not Available	865	Open in IMG/M
3300012469\|Ga0150984_104220277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300012492\|Ga0157335_1004590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	936	Open in IMG/M
3300012985\|Ga0164308_10610787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	929	Open in IMG/M
3300012985\|Ga0164308_11426320	Not Available	633	Open in IMG/M
3300012987\|Ga0164307_11470972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300013308\|Ga0157375_11896688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300014969\|Ga0157376_11096292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300015356\|Ga0134073_10436250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300015374\|Ga0132255_100787170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1417	Open in IMG/M
3300015374\|Ga0132255_104121633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300018051\|Ga0184620_10306652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300018089\|Ga0187774_10978206	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300019885\|Ga0193747_1005287	All Organisms → cellular organisms → Bacteria	3133	Open in IMG/M
3300019887\|Ga0193729_1170330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300021078\|Ga0210381_10213401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300022756\|Ga0222622_10715368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	728	Open in IMG/M
3300023057\|Ga0247797_1004528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1490	Open in IMG/M
3300024177\|Ga0247686_1016989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M
3300024251\|Ga0247679_1030778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	905	Open in IMG/M
3300024317\|Ga0247660_1048445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	700	Open in IMG/M
3300025898\|Ga0207692_10533336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300025912\|Ga0207707_11575371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300025917\|Ga0207660_10341323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1199	Open in IMG/M
3300025927\|Ga0207687_10899001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300025932\|Ga0207690_10651120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	863	Open in IMG/M
3300025935\|Ga0207709_11406912	Not Available	578	Open in IMG/M
3300025942\|Ga0207689_10977670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300025945\|Ga0207679_11700792	Not Available	577	Open in IMG/M
3300025961\|Ga0207712_10731261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M
3300025961\|Ga0207712_11337747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300026023\|Ga0207677_10187831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1632	Open in IMG/M
3300026300\|Ga0209027_1257502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300026325\|Ga0209152_10091483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1135	Open in IMG/M
3300026343\|Ga0209159_1092323	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1334	Open in IMG/M
3300028145\|Ga0247663_1006188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1582	Open in IMG/M
3300028381\|Ga0268264_12382677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300028596\|Ga0247821_11034285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300028705\|Ga0307276_10039348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1014	Open in IMG/M
3300028715\|Ga0307313_10258195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300028717\|Ga0307298_10014732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1985	Open in IMG/M
3300028722\|Ga0307319_10239134	Not Available	597	Open in IMG/M
3300028744\|Ga0307318_10247821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300028768\|Ga0307280_10014544	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300028768\|Ga0307280_10354585	Not Available	542	Open in IMG/M
3300028782\|Ga0307306_10089584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300028784\|Ga0307282_10064656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1654	Open in IMG/M
3300028787\|Ga0307323_10087457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1113	Open in IMG/M
3300028793\|Ga0307299_10196686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300028793\|Ga0307299_10314922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300028807\|Ga0307305_10163638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300028807\|Ga0307305_10261350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300028814\|Ga0307302_10027338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2610	Open in IMG/M
3300028819\|Ga0307296_10664543	Not Available	570	Open in IMG/M
3300028876\|Ga0307286_10013249	All Organisms → cellular organisms → Bacteria	2579	Open in IMG/M
3300028876\|Ga0307286_10172613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	779	Open in IMG/M
3300028880\|Ga0307300_10077856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	975	Open in IMG/M
3300028881\|Ga0307277_10274058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	746	Open in IMG/M
3300028884\|Ga0307308_10618344	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300028885\|Ga0307304_10269278	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300031995\|Ga0307409_100101962	All Organisms → cellular organisms → Bacteria	2383	Open in IMG/M
3300032180\|Ga0307471_101918007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	741	Open in IMG/M
3300032770\|Ga0335085_10171437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2693	Open in IMG/M
3300032782\|Ga0335082_10856111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300033004\|Ga0335084_11752323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.83%
Host-Associated	Host-Associated	26.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.09%
Plants	Host-Associated → Plants	26.17%
Aquatic	Environmental → Aquatic	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300024177	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1067013501	3300000956	Soil	VVTEEDLEWFVAALEQTVARAEKMPRALVRFALTAARAGRPSRLRPVRA*
JGI10216J12902_1098337653	3300000956	Soil	EDLEWFASALDETVARAEKMPRALVRFAVGAARAGRTPRRKLARA*
JGI10216J12902_1186520071	3300000956	Soil	LVVTEDDLDWFVSALEDTVARAEKMPRALVRFAVQAARSGRAPRPRRRLVRA*
C688J35102_1193763561	3300002568	Soil	DEDDLDWFVTALDETVSRAEKMPRALVRFALHAARAGRTPRKRLARA*
soilH1_101435244	3300003321	Sugarcane Root And Bulk Soil	HGLNVIKAIPPLVITEDDLEQFSGALDETVARAEKMPRALVRFALGAARAGRTPRRRPLARA*
Ga0062589_1009560473	3300004156	Soil	LEWFASALDETVARAEKMPRALVRFAVGAARAGRTPRRKLARA*
Ga0062595_1000693471	3300004479	Soil	LVVTEEDVDWFGSALEDTIARAEKMPRALVRFALRAASGRPRSAPRRASRLARAR*
Ga0062595_1010652482	3300004479	Soil	TEEDVDWFVSALEETITSAEKMPRALVRFALQAARAGRTPKRRLARA*
Ga0062591_1004454981	3300004643	Soil	TEDDLDWFVTALEETISKAEHMPRALVRFALGAARAGRGPRRRLVRA*
Ga0066815_100558832	3300005164	Soil	VVTEDDIEWLVAGLDDTIARAEKMPRALVRFGLTAARAGRTKRPRLARA*
Ga0066690_102905103	3300005177	Soil	IPPLVVIEEDVDWFVSALEETITRAEKMPRALVRFALQAARAGRTPRRRLARA*
Ga0066678_109941271	3300005181	Soil	TTPPLVVTEQDVDWFVAALEETISRAEKMPRALVRFALGAARAGRAPRRRLARA*
Ga0070687_1001000181	3300005343	Switchgrass Rhizosphere	LPPLVIDEDDLDWFVTALDETVARAERMPRALVRFALQAARAGRTPRRRLVRS*
Ga0070674_1010061051	3300005356	Miscanthus Rhizosphere	LDWFVTALDETVARAEKMPRALVRFALQAARAGRTPRGRLVRS*
Ga0070714_1010054463	3300005435	Agricultural Soil	TEDDLDWFVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA*
Ga0070700_1013067881	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTEDDLDWFVSALEETITRAERMPRALVRFALGAARAGRTPRRRLMRA*
Ga0070678_1000261271	3300005456	Miscanthus Rhizosphere	PLVVTEDDLDWFVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA*
Ga0070678_1001991151	3300005456	Miscanthus Rhizosphere	LPPLVVDEDDLDWFVTALDETVSKAEKMPRALVRFALTAARAGRTPRKRLARA*
Ga0070686_1001101241	3300005544	Switchgrass Rhizosphere	PPLVVDEDDLDLFVAALDETVSKAEKMPRALVRFALTAARAGRTPRKRLARA*
Ga0068856_1025048552	3300005614	Corn Rhizosphere	TQDDLDWFVSSLEETIMRAERMPRALVRFALGAARAGRTPRRRLTRA*
Ga0068860_1021040631	3300005843	Switchgrass Rhizosphere	LPPLVVDGDDLDWFVTALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARVSS*
Ga0066651_101017853	3300006031	Soil	VTAEDVDWFVSALEETVADAEKMPRALVRFALGAARAGRPKRKRLVRA*
Ga0070716_1001563003	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GLNVLKALPPLVVIEDDLDWFVGSLEETVAQAEKMPRALIRFALQAARAGRTPRSRMARA
Ga0097621_1019102942	3300006237	Miscanthus Rhizosphere	VGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA*
Ga0079220_100758931	3300006806	Agricultural Soil	LVVDEDDLDWFVAALDETVLKAEKMPRALVRFALTAARAGRTPRKRLARA*
Ga0075426_113553651	3300006903	Populus Rhizosphere	ETIGKAEHMPRALVRFALGAARAGRGPRRRLVRA*
Ga0105245_100369929	3300009098	Miscanthus Rhizosphere	LDWFVTALDETVARAEKMPRALVRFALQAARAGRTPRRRLVRS*
Ga0066709_1027731201	3300009137	Grasslands Soil	NVVKALPPLVVTGDDLDGFVSALEETIDRAEKMPRALVRFALTAARAGRTPKRRLARA*
Ga0066709_1041348202	3300009137	Grasslands Soil	ETVAGAEKMPRALVRFALQAARAGRTPRRRLARA*
Ga0111538_103398301	3300009156	Populus Rhizosphere	LNVIKAIPPLVVSEDDLDWFASALEETIAKAEHMPRALVRFALGTARAGRGPRRRLVRA*
Ga0105241_102795654	3300009174	Corn Rhizosphere	FVAALDETVSKAEKMPRALVRFALTAARAGRTPRKRLARA*
Ga0105249_127536691	3300009553	Switchgrass Rhizosphere	FVSALEETIARAEKMPRALVRFALQAARAGRTPRRRPARV*
Ga0105249_135593072	3300009553	Switchgrass Rhizosphere	DLEWFAAALDETVARAEKMPRALVRFAVGAARAGRTPRRKLARA*
Ga0126321_13477711	3300010145	Soil	TEEDLDWFVSALEETVARAEKMPRALVRFVLQAARAGRTPRRRLARA*
Ga0134065_101269052	3300010326	Grasslands Soil	VTEEDVDWFVTALEETIARAEKMPRALVRFALGAARAGRSPRRKLARV*
Ga0126379_109506371	3300010366	Tropical Forest Soil	IPPLVVTEEDVDWFVSALEETIASAEKMPRALVRLALQAARAGRTPRRRPARV*
Ga0134123_111318992	3300010403	Terrestrial Soil	EEDLDWFVSALEETIARAEKMPRALVRFALQAARSGRTPKRRLARA*
Ga0137382_109355492	3300012200	Vadose Zone Soil	LVVNGDDLDGFVTALEETIDRSEKMPRALVRFALTAARAGRTPKRRLARA*
Ga0137376_116290931	3300012208	Vadose Zone Soil	WFVSALEETVARAEKMPRALVRFALRAARAGRAPRRRLTRA*
Ga0137377_117101221	3300012211	Vadose Zone Soil	IPPLVVMEEDVDWFVSALEETITQAEKMPRALVRFALQAARAGRTPRRRLTRA*
Ga0137372_101465061	3300012350	Vadose Zone Soil	KAIPPLVVIEEDLDWFVSALEETVAGAEKMPRALVRFALQAARAGRPQRRRLARA*
Ga0137371_102154153	3300012356	Vadose Zone Soil	NVLKAIPPLVVTEEDLDWFVSALEETVAGAEKMPRALVRFALQAARAGRPQRRRLARA*
Ga0137371_105765663	3300012356	Vadose Zone Soil	EETIARAEKTPRALVRFALGAARAGRTPRRRLARA*
Ga0150984_1042202772	3300012469	Avena Fatua Rhizosphere	LKAIPPLVVTEEDVDWFANALDETIARAEKMPRALVRFALGAARAGRAPKRKLARERATA
Ga0157335_10045901	3300012492	Arabidopsis Rhizosphere	PPLVVSEDDLDWFVSALEETIGKAERMPRALVRFALGAARAGRGPRRRLARA*
Ga0164308_106107871	3300012985	Soil	ALDETVTRAEKMPRALVRFGLQAARAGRTPRKRLARA*
Ga0164308_114263201	3300012985	Soil	LVIDEDDLDWFVAALDETVARAETMPRALVRFALHAASAGRTPRKRLARA*
Ga0164307_114709722	3300012987	Soil	PLVVTEEDVDWFATALDETIGRAEKMPRALVRFALGAARAGRAPKRKLARV*
Ga0157375_118966881	3300013308	Miscanthus Rhizosphere	DLDWFVTALEETVSKAEKMPRALMRFALTAARAGRTPRKRLARA*
Ga0157376_110962923	3300014969	Miscanthus Rhizosphere	LVVDEDDLDWFVTALEETVSKAEKMPRALMRFALTAARAGRTPRKRLARA*
Ga0134073_104362502	3300015356	Grasslands Soil	LDWFVSALEETIGRAEKMPRALVRFALRAARAGRTPRRRPVRA*
Ga0132255_1007871704	3300015374	Arabidopsis Rhizosphere	VLKALPPLVVDEDDLDWFVTALDETVGRAEKMPRALVRFALQAARGGRTPRKRLARA*
Ga0132255_1041216332	3300015374	Arabidopsis Rhizosphere	KAIPPLVVSEDDLDWFVSALDETIGKAEHMPRALVRFALGAARAGRGPRRRPARA*
Ga0184620_103066522	3300018051	Groundwater Sediment	LPPLVVTEEDLDSFASALEGTIGRAERMPRALVRFALGAARAGGKPRRRMARA
Ga0187774_109782061	3300018089	Tropical Peatland	HGVNVIKAIPPLVVTEEDVDWLASALEETIAHAEKMPRALVRFALTAARAGRTKRRRLAR
Ga0193747_10052871	3300019885	Soil	CELVTGDDLDGFVVALEETIDRAEKMPRALVRFALTAARAGRTPKRRLARA
Ga0193729_11703301	3300019887	Soil	LDSFASALEDTVSRAERMPRALVRFALGAARASGRPRRRLTRV
Ga0210381_102134011	3300021078	Groundwater Sediment	DLDWFVSALEETITRAERMPRALVRFALGAARAGRTPRRRLMRA
Ga0222622_107153681	3300022756	Groundwater Sediment	WFVSALEETVTKAERMPRALVRFALQAARAGRAPRRRPVRA
Ga0247797_10045281	3300023057	Soil	EDDLEWFASALDETVARAEKMPRALVRFAVGAARAGRNPRRKLARA
Ga0247686_10169891	3300024177	Soil	LEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0247679_10307783	3300024251	Soil	FVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0247660_10484451	3300024317	Soil	LVVTEDDLDWFVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0207692_105333363	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	DLDWLVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0207707_115753712	3300025912	Corn Rhizosphere	VVTEDDLDWFVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0207660_103413231	3300025917	Corn Rhizosphere	WFANALDETIARAEKMPRALVRFALGAARAGRAPKRKLVRA
Ga0207687_108990013	3300025927	Miscanthus Rhizosphere	VSALEETITRAERMPRALVRFALGAARAGRTPRRRLMRA
Ga0207690_106511203	3300025932	Corn Rhizosphere	KALPPLVIDEDDLDWFVTSLDETVVRAERMPRALVRFALQAARAGRTPRRRLVRS
Ga0207709_114069123	3300025935	Miscanthus Rhizosphere	LVIDEDDLDWFVTALDETVARAERMPRALVRFALQAARAGRTPRRRLVRS
Ga0207689_109776701	3300025942	Miscanthus Rhizosphere	DDLDWFVAALEETVSKAEKMPRALVRFALTAARAGRTPRKRLARA
Ga0207679_117007923	3300025945	Corn Rhizosphere	LNVLKALPPLVVTEDDLDWFVGSLEKTVTQAEKMPRALVRFALTAARAGRTPRKRLARA
Ga0207712_107312613	3300025961	Switchgrass Rhizosphere	ALPPLVIDEDDLDWFVTALDETVARAERMPRALVRFALQAARAGRTPRRRLVRS
Ga0207712_113377473	3300025961	Switchgrass Rhizosphere	DLEWFAAALDETVARAEKMPRALVRFAVGAARAGRTPRRKLARA
Ga0207677_101878311	3300026023	Miscanthus Rhizosphere	KALPPLGVDEDDLDWFVAALDETVSKAEKMPRALVRFALTAARAGRTPRKRLARA
Ga0209027_12575022	3300026300	Grasslands Soil	EEAVAGAEKMPRALVRFALGAAKAGRPARKRLTRA
Ga0209152_100914831	3300026325	Soil	PLVVGEDDLDWFATALDDTVARAEKMPRALVRFALHAARAGRKPRKRLARA
Ga0209159_10923231	3300026343	Soil	VVTEEDVDWFVSALEETVAGAEKMPRALVRFALGAAKAGRTPGKRVARA
Ga0247663_10061884	3300028145	Soil	EDDLDWFVGSLEETVAQAEKMPRALVRFALQAARAGAPRRRPVRA
Ga0268264_123826771	3300028381	Switchgrass Rhizosphere	LPPLVVDGDDLDWFVTALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARVSS
Ga0247821_110342851	3300028596	Soil	FVTALDETVARAEKMPRALVRFALQAARAGRTPRKRLARV
Ga0307276_100393481	3300028705	Soil	TEEDLDSFASALEDTVRRAERMPRALVRFALGAARAGGKPRGRLTRV
Ga0307313_102581951	3300028715	Soil	PLVVTEDDLDWFVSALEETITRAERMPRALVRFALGAARAGRTPRRRLMRA
Ga0307298_100147321	3300028717	Soil	VDEDDLDWFVTALDETVTRAEKMPRALVRFALQAARAGRTPRKRLARA
Ga0307319_102391343	3300028722	Soil	LVVTDDDLDWFVSALEETVTKAERMPRALVRFALQAARAGRAPRRRPVRA
Ga0307318_102478213	3300028744	Soil	PFASALEETIGRAERMPRALVRFALGAARAGGKPRRRLIRA
Ga0307280_100145441	3300028768	Soil	LVVDADDLDWFVSALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARA
Ga0307280_103545851	3300028768	Soil	EETVTKAERMPRALVRFALQAARAGRAPRRRPVRA
Ga0307306_100895843	3300028782	Soil	NVLKALPSLVVDADDLDWFVSALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARA
Ga0307282_100646561	3300028784	Soil	VDADDLDWFVSALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARA
Ga0307323_100874571	3300028787	Soil	WFVSALEETITRAERMPRALVRFALGAARAGRTPRRRLIRA
Ga0307299_101966862	3300028793	Soil	LVVTEDDVDWFANALDETIARAEKMPRALVRFALGAARAGRAPKRKLARV
Ga0307299_103149221	3300028793	Soil	VVDEDDLDWFVTALDETVTRAEKMPRALVRFALQAARAGRTPRKRLARA
Ga0307305_101636383	3300028807	Soil	LEGTIGRAERMPRALVRFALGAARAGGKPRRRMARA
Ga0307305_102613503	3300028807	Soil	DLDWFVSALDETVARAEKMPRALVRFGLHAARVGRTPRKRLARA
Ga0307302_100273381	3300028814	Soil	ALEETVARAEKMPRALVRFALQAARAGRTPRRRSLARA
Ga0307296_106645433	3300028819	Soil	DADALDWFVSALDETVARAEKMPRALVRFGLQAARAGRTPRKRLARA
Ga0307286_100132491	3300028876	Soil	DDLDWFVTALDETVTRAEKMPRALVRFALQAARAGRTPRKRLARA
Ga0307286_101726131	3300028876	Soil	DLDWFVSALEETITRAERMPRALVRFALGAARAGRTPRRRLIRA
Ga0307300_100778561	3300028880	Soil	LDETVARAEKMPRALVRFALQATRAGRSPRRRPVRA
Ga0307277_102740582	3300028881	Soil	EDDLDWFVAALDETVSRAEKMPRALVRFALHAARAGRSPRRRPVRA
Ga0307308_106183441	3300028884	Soil	DVDWFVSALEETIASAEKMPRALVRFALQAARSGRAPKRRLART
Ga0307304_102692781	3300028885	Soil	EETIARAEKMPRALVRFALQAARAGRTPRRRLARA
Ga0307409_1001019621	3300031995	Rhizosphere	LNVLKGLPPLVIGEDDLDWFVSGLEDTVSRAERMPRALVRFALHAARAGRTSRRRLVRA
Ga0307471_1019180071	3300032180	Hardwood Forest Soil	DLDWFVSALEETIARAEKMPRALVRFALQAARAGRTPRRRPARV
Ga0335085_101714375	3300032770	Soil	DLDGFVVALEETIERAEKMPRALVRFALTAARAGRMPRRRLARA
Ga0335082_108561112	3300032782	Soil	KAIPPLVVTGDDLDGFVVALEETIERAEKMPRALVRFALGAARAGRMPKRRLARA
Ga0335084_117523232	3300033004	Soil	DLDGFVVALEETIERAEKMPRALVRFALGAARAGRMPKRRLARA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092626

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences