Scaffold JGI25384J37096_10000144

Overview

Basic Information

• Taxon OID: 3300002561
• Scaffold ID: JGI25384J37096_10000144
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17106
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017200	Metagenome	242	Y
F022177	Metagenome / Metatranscriptome	215	Y
F059802	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25384J37096_1000014411	F017200	GAGG	MQQLIYSVPRGLRAGAXGGFVGAIVLGILGEIGALAMNQELFYTTIARKMGFGDYSVLGGWTLHFLVGIIAGSLFIGATAALRSFMLTTTKKALWVGILGGIAIWIVVYVPVTGXLVPDDLTNVTFAGGSFVLHVLXGVVTAIVSLSFLRRTIKTKTTV*
JGI25384J37096_1000014418	F022177	GGCGG	MNDTRDGIRENYRWTAYMKLKGQTWARKEEEILDEFDGFVQSLRGVGVDYNIIVMVEGGVPRQLHSDYKATETGAKIARQGSGA*
JGI25384J37096_100001442	F059802	GAG	VVVTDQVDRNFIADLLVLLVILVVVVGGFALLHTTAILLGGGLALVVAAAAEFVWSR*