Scaffold JGI25330J36431_1011908

Overview

Basic Information

• Taxon OID: 3300002559
• Scaffold ID: JGI25330J36431_1011908
• Source Dataset Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location

• Location Name: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004068	Metagenome / Metatranscriptome	454	Y
F028398	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25330J36431_10119081	F028398	N/A	MVQNAPKHYETHQNMSLRSDGVDRVDLLQKILTQLCGLNFCINYNSSARVEPSIVKQR
JGI25330J36431_10119082	F004068	AGG	MGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSGAFVAKNSDTTSWDELLHYLH*